1 PAS_3#1
38-102 aa · 65 aa · 5.5% of protein
Raw token
PAS_3:38:0.0000452:102:67:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS15215
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034124705
ClassHKTypeHybridLength1184 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS15215Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1184 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage451 / 1184 aa (38.1%)Merged over positioned domains only.
Domain description2 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1184 aa
Domain-by-domain annotation5 items
2 PAS_3#2
268-351 aa · 84 aa · 7.1% of protein
Raw token
PAS_3:268:0.00000019:351:84:893 HisKA#3
779-843 aa · 65 aa · 5.5% of protein
Raw token
HisKA:779:0.0000000000000052:843:65:644 HATPase_c#4
892-1012 aa · 121 aa · 10.2% of protein
Raw token
HATPase_c:892:5.08e-28:1012:121:1095 Response_reg#5
1052-1167 aa · 116 aa · 9.8% of protein
Raw token
Response_reg:1052:6.48e-26:1167:116:111- Raw architecture: PAS_3:38:0.0000452:102:67:89#PAS_3:268:0.00000019:351:84:89#HisKA:779:0.0000000000000052:843:65:64#HATPase_c:892:5.08e-28:1012:121:109#Response_reg:1052:6.48e-26:1167:116:111
- Domain description: 2 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000075.1::G00080
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span35587-42731Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000075.1::G00080Context members
U0E26_RS15210U0E26_RS15215
Partner locus tags
U0E26_RS15210U0E26_RS15215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466318.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DQE1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DQE1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS15215Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000075.1Sequence record reported by the local genomic context database.
Genomic interval39 177-42 731 nt3 555 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 587-42 731 ntGCF_034124705::NZ_JAWYAM010000075.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000075.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000075.1All displayed genes belong to this local TCS context.
Neighborhood span35 587-42 731 nt7 145 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 587 nt42 731 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS15210GCF_034124705#U0E26_RS15210
HKHybrid
35 587-39 171 nt · Forward (+)
U0E26_RS15215GCF_034124705#U0E26_RS15215
HKHybridCurrent focus
39 177-42 731 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS08360Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0170680
Simplified PFAM architecture for HKOC_0170680
PFAM domain coverage: 383 / 1184 aa (32.3%)
1 aa1184 aa
PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[268-350] | HisKA[779-843] | HATPase_c[892-1011] | Response_reg[1052-1166]
- Domain count: 4
- Matched identifier: HKOC_0170680
- Positioned domains: PAS_3 268-350 ; HisKA 779-843 ; HATPase_c 892-1011 ; Response_reg 1052-1166
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS08360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key