1 PAS_3#1
172-256 aa · 85 aa · 7.1% of protein
Raw token
PAS_3:172:4.23e-17:256:85:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS15210
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034124705
ClassHKTypeHybridLength1194 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS15210Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1194 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage588 / 1194 aa (49.2%)Merged over positioned domains only.
Domain description2 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1194 aa
Domain-by-domain annotation6 items
2 PAS_3#2
294-380 aa · 87 aa · 7.3% of protein
Raw token
PAS_3:294:0.000000000000001:380:88:893 HisKA#3
676-742 aa · 67 aa · 5.6% of protein
Raw token
HisKA:676:0.00000000000000339:742:67:644 HATPase_c#4
789-906 aa · 118 aa · 9.9% of protein
Raw token
HATPase_c:789:4.88e-30:906:119:1095 Response_reg#5
929-1042 aa · 114 aa · 9.5% of protein
Raw token
Response_reg:929:9.08e-20:1042:114:1116 Response_reg#6
1069-1185 aa · 117 aa · 9.8% of protein
Raw token
Response_reg:1069:8.13e-26:1185:117:111- Raw architecture: PAS_3:172:4.23e-17:256:85:89#PAS_3:294:0.000000000000001:380:88:89#HisKA:676:0.00000000000000339:742:67:64#HATPase_c:789:4.88e-30:906:119:109#Response_reg:929:9.08e-20:1042:114:111#Response_reg:1069:8.13e-26:1185:117:111
- Domain description: 2 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000075.1::G00080
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span35587-42731Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000075.1::G00080Context members
U0E26_RS15210U0E26_RS15215
Partner locus tags
U0E26_RS15210U0E26_RS15215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466319.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P7S4Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P7S4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS15210Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000075.1Sequence record reported by the local genomic context database.
Genomic interval35 587-39 171 nt3 585 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 587-42 731 ntGCF_034124705::NZ_JAWYAM010000075.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000075.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000075.1All displayed genes belong to this local TCS context.
Neighborhood span35 587-42 731 nt7 145 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 587 nt42 731 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS15210GCF_034124705#U0E26_RS15210
HKHybridCurrent focus
35 587-39 171 nt · Forward (+)
U0E26_RS15215GCF_034124705#U0E26_RS15215
HKHybrid
39 177-42 731 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS08365Use this link to inspect the representative gene detail.
PFAM architectureSnoaL_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg7 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0165116
Simplified PFAM architecture for HKOC_0165116
PFAM domain coverage: 690 / 1194 aa (57.8%)
1 aa1194 aa
SnoaL_3PAS_3PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: SnoaL_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: SnoaL_3[15-120] | PAS_3[172-256] | PAS_3[295-379] | HisKA[676-742] | HATPase_c[789-904] | Response_reg[929-1042] | Response_reg[1069-1185]
- Domain count: 7
- Matched identifier: HKOC_0165116
- Positioned domains: SnoaL_3 15-120 ; PAS_3 172-256 ; PAS_3 295-379 ; HisKA 676-742 ; HATPase_c 789-904 ; Response_reg 929-1042 ; Response_reg 1069-1185
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS08365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key