1 GGDEF#1
1-120 aa · 120 aa · 17.4% of protein
Raw token
GGDEF:1:1.45e-18:120:124:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS14750
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034124705
ClassHKTypeHybridLength691 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124705#U0E26_RS14750Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length691 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage419 / 691 aa (60.6%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa691 aa
Domain-by-domain annotation4 items
2 HisKA#2
314-380 aa · 67 aa · 9.7% of protein
Raw token
HisKA:314:6.42e-16:380:67:643 HATPase_c#3
427-541 aa · 115 aa · 16.6% of protein
Raw token
HATPase_c:427:4.72e-32:541:115:1094 Response_reg#4
567-683 aa · 117 aa · 16.9% of protein
Raw token
Response_reg:567:2.21e-31:683:117:111- Raw architecture: GGDEF:1:1.45e-18:120:124:160#HisKA:314:6.42e-16:380:67:64#HATPase_c:427:4.72e-32:541:115:109#Response_reg:567:2.21e-31:683:117:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124705::NZ_JAWYAM010000070.1::G00078
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span44691-46768Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000070.1::G00078Context members
U0E26_RS14750
Partner locus tags
U0E26_RS14750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320998646.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS14750Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000070.1Sequence record reported by the local genomic context database.
Genomic interval44 691-46 768 nt2 078 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 691-46 768 ntGCF_034124705::NZ_JAWYAM010000070.1::G00078
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000070.1::G00078Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000070.1All displayed genes belong to this local TCS context.
Neighborhood span44 691-46 768 nt2 078 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 691 nt46 768 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E26_RS14750GCF_034124705#U0E26_RS14750
HKHybridCurrent focus
44 691-46 768 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034124445#U0C54_RS21255Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + GGDEF + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0205219
Simplified PFAM architecture for HKOC_0205219
PFAM domain coverage: 533 / 1144 aa (46.6%)
1 aa1144 aa
PAS_3GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[183-266] | GGDEF[420-572] | HisKA[767-833] | HATPase_c[881-993] | Response_reg[1020-1135]
- Domain count: 5
- Matched identifier: HKOC_0205219
- Positioned domains: PAS_3 183-266 ; GGDEF 420-572 ; HisKA 767-833 ; HATPase_c 881-993 ; Response_reg 1020-1135
Cluster members and taxonomy
Representative gene: GCF_034124445#U0C54_RS21255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key