1 HAMP#1
299-366 aa · 68 aa · 11.5% of protein
Raw token
HAMP:299:0.000000571:366:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS14435
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS14435Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 589 aa (41.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation3 items
2 His_kinase#2
383-462 aa · 80 aa · 13.6% of protein
Raw token
His_kinase:383:9.72e-31:462:80:803 HATPase_c#3
486-580 aa · 95 aa · 16.1% of protein
Raw token
HATPase_c:486:0.000000000013:580:100:109- Raw architecture: HAMP:299:0.000000571:366:68:69#His_kinase:383:9.72e-31:462:80:80#HATPase_c:486:0.000000000013:580:100:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000069.1::G00076
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3651-6919Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000069.1::G00076Context members
U0E26_RS14435U0E26_RS14440
Partner locus tags
U0E26_RS14435U0E26_RS14440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025531394.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS14435Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000069.1Sequence record reported by the local genomic context database.
Genomic interval3 651-5 420 nt1 770 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 651-6 919 ntGCF_034124705::NZ_JAWYAM010000069.1::G00076
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000069.1::G00076Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000069.1All displayed genes belong to this local TCS context.
Neighborhood span3 651-6 919 nt3 269 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 651 nt6 919 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS14435GCF_034124705#U0E26_RS14435
HKClassicCurrent focus
3 651-5 420 nt · Reverse (-)
U0E26_RS14440GCF_034124705#U0E26_RS14440
RRunclassified
5 417-6 919 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034124445#U0C54_RS07635Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1118427
Simplified PFAM architecture for HKOC_1118427
PFAM domain coverage: 181 / 589 aa (30.7%)
1 aa589 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[384-462] | HATPase_c[480-581]
- Domain count: 2
- Matched identifier: HKOC_1118427
- Positioned domains: His_kinase 384-462 ; HATPase_c 480-581
Cluster members and taxonomy
Representative gene: GCF_034124445#U0C54_RS07635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key