1 SBP_bac_3#1
54-245 aa · 192 aa · 20.0% of protein
Raw token
SBP_bac_3:54:0.00000000000000288:245:204:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS13895
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034124705
ClassHKTypeHybridLength960 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124705#U0E26_RS13895Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length960 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage709 / 960 aa (73.9%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa960 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
285-485 aa · 201 aa · 20.9% of protein
Raw token
SBP_bac_3:285:3.26e-18:485:219:2243 HisKA#3
557-623 aa · 67 aa · 7.0% of protein
Raw token
HisKA:557:1.14e-17:623:67:644 HATPase_c#4
669-804 aa · 136 aa · 14.2% of protein
Raw token
HATPase_c:669:9.93e-26:804:137:1095 Response_reg#5
830-942 aa · 113 aa · 11.8% of protein
Raw token
Response_reg:830:9.56e-25:942:113:111- Raw architecture: SBP_bac_3:54:0.00000000000000288:245:204:224#SBP_bac_3:285:3.26e-18:485:219:224#HisKA:557:1.14e-17:623:67:64#HATPase_c:669:9.93e-26:804:137:109#Response_reg:830:9.56e-25:942:113:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124705::NZ_JAWYAM010000065.1::G00072
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3367-6249Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000065.1::G00072Context members
U0E26_RS13895
Partner locus tags
U0E26_RS13895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_082196307.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DCH6Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DCH6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS13895Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000065.1Sequence record reported by the local genomic context database.
Genomic interval3 367-6 249 nt2 883 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 367-6 249 ntGCF_034124705::NZ_JAWYAM010000065.1::G00072
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000065.1::G00072Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000065.1All displayed genes belong to this local TCS context.
Neighborhood span3 367-6 249 nt2 883 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 367 nt6 249 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E26_RS13895GCF_034124705#U0E26_RS13895
HKHybridCurrent focus
3 367-6 249 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS29595Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0317831
Simplified PFAM architecture for HKOC_0317831
PFAM domain coverage: 714 / 960 aa (74.4%)
1 aa960 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[54-248] | SBP_bac_3[285-487] | HisKA[557-623] | HATPase_c[669-803] | Response_reg[830-943]
- Domain count: 5
- Matched identifier: HKOC_0317831
- Positioned domains: SBP_bac_3 54-248 ; SBP_bac_3 285-487 ; HisKA 557-623 ; HATPase_c 669-803 ; Response_reg 830-943
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS29595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key