1 HAMP#1
145-212 aa · 68 aa · 15.9% of protein
Raw token
HAMP:145:0.0000105:212:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS13870
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength427 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS13870Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length427 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage219 / 427 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa427 aa
Domain-by-domain annotation3 items
2 HisKA#2
223-284 aa · 62 aa · 14.5% of protein
Raw token
HisKA:223:0.000000000124:284:62:643 HATPase_c#3
339-427 aa · 89 aa · 20.8% of protein
Raw token
HATPase_c:339:0.0000000143:427:106:109- Raw architecture: HAMP:145:0.0000105:212:68:69#HisKA:223:0.000000000124:284:62:64#HATPase_c:339:0.0000000143:427:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000064.1::G00071
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27323-29348Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000064.1::G00071Context members
U0E26_RS13865U0E26_RS13870
Partner locus tags
U0E26_RS13865U0E26_RS13870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_051364779.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS13870Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000064.1Sequence record reported by the local genomic context database.
Genomic interval28 065-29 348 nt1 284 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 323-29 348 ntGCF_034124705::NZ_JAWYAM010000064.1::G00071
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000064.1::G00071Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000064.1All displayed genes belong to this local TCS context.
Neighborhood span27 323-29 348 nt2 026 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 323 nt29 348 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS13865GCF_034124705#U0E26_RS13865
RROmpR
27 323-28 009 nt · Forward (+)
U0E26_RS13870GCF_034124705#U0E26_RS13870
HKClassicCurrent focus
28 065-29 348 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS31600Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1990605
Simplified PFAM architecture for HKOC_1990605
PFAM domain coverage: 102 / 448 aa (22.8%)
1 aa448 aa
HAMPHisKA
- Simplified architecture: HAMP + HisKA
- Raw architecture: HAMP[190-231] | HisKA[245-304]
- Domain count: 2
- Matched identifier: HKOC_1990605
- Positioned domains: HAMP 190-231 ; HisKA 245-304
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS31600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key