1 dCache_1#1
165-287 aa · 123 aa · 19.7% of protein
Raw token
dCache_1:165:0.0000605:287:127:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS13670
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength624 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS13670Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length624 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage395 / 624 aa (63.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa624 aa
Domain-by-domain annotation4 items
2 HAMP#2
305-372 aa · 68 aa · 10.9% of protein
Raw token
HAMP:305:0.00000000000449:372:68:693 His_kinase#3
387-466 aa · 80 aa · 12.8% of protein
Raw token
His_kinase:387:7.98e-26:466:80:804 HATPase_c#4
485-608 aa · 124 aa · 19.9% of protein
Raw token
HATPase_c:485:0.000000444:608:124:109- Raw architecture: dCache_1:165:0.0000605:287:127:195#HAMP:305:0.00000000000449:372:68:69#His_kinase:387:7.98e-26:466:80:80#HATPase_c:485:0.000000444:608:124:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000063.1::G00069
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71643-75121Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000063.1::G00069Context members
U0E26_RS13670U0E26_RS13675
Partner locus tags
U0E26_RS13670U0E26_RS13675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029465455.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DRR3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DRR3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS13670Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000063.1Sequence record reported by the local genomic context database.
Genomic interval71 643-73 517 nt1 875 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 643-75 121 ntGCF_034124705::NZ_JAWYAM010000063.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000063.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000063.1All displayed genes belong to this local TCS context.
Neighborhood span71 643-75 121 nt3 479 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 643 nt75 121 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS13670GCF_034124705#U0E26_RS13670
HKClassicCurrent focus
71 643-73 517 nt · Forward (+)
U0E26_RS13675GCF_034124705#U0E26_RS13675
RRunclassified
73 514-75 121 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS02300Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0962110
Simplified PFAM architecture for HKOC_0962110
PFAM domain coverage: 128 / 624 aa (20.5%)
1 aa624 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[321-370] | His_kinase[388-465]
- Domain count: 2
- Matched identifier: HKOC_0962110
- Positioned domains: HAMP 321-370 ; His_kinase 388-465
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS02300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key