1 dCache_1#1
188-296 aa · 109 aa · 17.6% of protein
Raw token
dCache_1:188:0.00000125:296:112:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS11845
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength620 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS11845Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length620 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage353 / 620 aa (56.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa620 aa
Domain-by-domain annotation4 items
2 HAMP#2
313-383 aa · 71 aa · 11.5% of protein
Raw token
HAMP:313:0.000000221:383:71:693 His_kinase#3
398-477 aa · 80 aa · 12.9% of protein
Raw token
His_kinase:398:2.68e-27:477:80:804 HATPase_c#4
518-610 aa · 93 aa · 15.0% of protein
Raw token
HATPase_c:518:0.00000000000142:610:93:109- Raw architecture: dCache_1:188:0.00000125:296:112:195#HAMP:313:0.000000221:383:71:69#His_kinase:398:2.68e-27:477:80:80#HATPase_c:518:0.00000000000142:610:93:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000058.1::G00063
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21807-24928Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000058.1::G00063Context members
U0E26_RS11840U0E26_RS11845
Partner locus tags
U0E26_RS11840U0E26_RS11845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025532118.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS11845Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000058.1Sequence record reported by the local genomic context database.
Genomic interval23 066-24 928 nt1 863 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 807-24 928 ntGCF_034124705::NZ_JAWYAM010000058.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000058.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000058.1All displayed genes belong to this local TCS context.
Neighborhood span21 807-24 928 nt3 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 807 nt24 928 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS11840GCF_034124705#U0E26_RS11840
RRunclassified
21 807-23 042 nt · Forward (+)
U0E26_RS11845GCF_034124705#U0E26_RS11845
HKClassicCurrent focus
23 066-24 928 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS23615Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0973148
Simplified PFAM architecture for HKOC_0973148
PFAM domain coverage: 194 / 620 aa (31.3%)
1 aa620 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[399-477] | HATPase_c[497-611]
- Domain count: 2
- Matched identifier: HKOC_0973148
- Positioned domains: His_kinase 399-477 ; HATPase_c 497-611
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS23615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key