1 PAS_3#1
441-503 aa · 63 aa · 5.9% of protein
Raw token
PAS_3:441:0.0000132:503:64:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS11795
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034124705
ClassHKTypeHybridLength1062 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124705#U0E26_RS11795Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1062 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage428 / 1062 aa (40.3%)Merged over positioned domains only.
Domain description2 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1062 aa
Domain-by-domain annotation5 items
2 PAS_3#2
580-645 aa · 66 aa · 6.2% of protein
Raw token
PAS_3:580:0.0000808:645:67:893 HisKA#3
678-744 aa · 67 aa · 6.3% of protein
Raw token
HisKA:678:6.98e-16:744:67:644 HATPase_c#4
791-905 aa · 115 aa · 10.8% of protein
Raw token
HATPase_c:791:7.16e-30:905:116:1095 Response_reg#5
941-1057 aa · 117 aa · 11.0% of protein
Raw token
Response_reg:941:5.11e-32:1057:117:111- Raw architecture: PAS_3:441:0.0000132:503:64:89#PAS_3:580:0.0000808:645:67:89#HisKA:678:6.98e-16:744:67:64#HATPase_c:791:7.16e-30:905:116:109#Response_reg:941:5.11e-32:1057:117:111
- Domain description: 2 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124705::NZ_JAWYAM010000058.1::G00062
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span12087-15275Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000058.1::G00062Context members
U0E26_RS11795
Partner locus tags
U0E26_RS11795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117502709.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DG38Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DG38_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS11795Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000058.1Sequence record reported by the local genomic context database.
Genomic interval12 087-15 275 nt3 189 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 087-15 275 ntGCF_034124705::NZ_JAWYAM010000058.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000058.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000058.1All displayed genes belong to this local TCS context.
Neighborhood span12 087-15 275 nt3 189 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 087 nt15 275 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E26_RS11795GCF_034124705#U0E26_RS11795
HKHybridCurrent focus
12 087-15 275 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS23665Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0251419
Simplified PFAM architecture for HKOC_0251419
PFAM domain coverage: 299 / 1062 aa (28.2%)
1 aa1062 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[678-744] | HATPase_c[791-906] | Response_reg[941-1056]
- Domain count: 3
- Matched identifier: HKOC_0251419
- Positioned domains: HisKA 678-744 ; HATPase_c 791-906 ; Response_reg 941-1056
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS23665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key