1 Response_reg#1
4-116 aa · 113 aa · 43.8% of protein
Raw token
Response_reg:4:1.53e-24:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS11250
Response regulator, unclassified
Hungatella effluvii · GCF_034124705
ClassRRTypeunclassifiedLength258 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS11250Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length258 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage197 / 258 aa (76.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa258 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
164-205 aa · 42 aa · 16.3% of protein
Raw token
HTH_AraC:164:0.00000000116:205:42:423 HTH_AraC#3
213-254 aa · 42 aa · 16.3% of protein
Raw token
HTH_AraC:213:0.0000000806:254:42:42- Raw architecture: Response_reg:4:1.53e-24:116:114:111#HTH_AraC:164:0.00000000116:205:42:42#HTH_AraC:213:0.0000000806:254:42:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000050.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17073-19549Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000050.1::G00061Context members
U0E26_RS11245U0E26_RS11250
Partner locus tags
U0E26_RS11245U0E26_RS11250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002602634.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DP83Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DP83_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS11250Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000050.1Sequence record reported by the local genomic context database.
Genomic interval18 773-19 549 nt777 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 073-19 549 ntGCF_034124705::NZ_JAWYAM010000050.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000050.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000050.1All displayed genes belong to this local TCS context.
Neighborhood span17 073-19 549 nt2 477 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 073 nt19 549 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS11245GCF_034124705#U0E26_RS11245
HKClassic
17 073-18 785 nt · Forward (+)
U0E26_RS11250GCF_034124705#U0E26_RS11250
RRunclassifiedCurrent focus
18 773-19 549 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS14245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0662407
Simplified PFAM architecture for RROC_0662407
PFAM domain coverage: 188 / 258 aa (72.9%)
1 aa258 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[179-254]
- Domain count: 2
- Matched identifier: RROC_0662407
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 179-254 ; HTH_18 179-254
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS14245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key