1 Response_reg#1
6-110 aa · 105 aa · 19.1% of protein
Raw token
Response_reg:6:1.26e-28:110:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS10870
Response regulator, RpfG family
Hungatella effluvii · GCF_034124705
ClassRRTypeRpfGLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS10870Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage382 / 550 aa (69.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation3 items
2 HD#2
167-300 aa · 134 aa · 24.4% of protein
Raw token
HD:167:0.000000000000142:300:134:1103 GGDEF#3
390-532 aa · 143 aa · 26.0% of protein
Raw token
GGDEF:390:1.47e-37:532:156:160- Raw architecture: Response_reg:6:1.26e-28:110:106:111#HD:167:0.000000000000142:300:134:110#GGDEF:390:1.47e-37:532:156:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000045.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1154-5756Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000045.1::G00058Context members
U0E26_RS10870U0E26_RS10880
Partner locus tags
U0E26_RS10870U0E26_RS10880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025531994.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DFW9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DFW9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS10870Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000045.1Sequence record reported by the local genomic context database.
Genomic interval1 154-2 806 nt1 653 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 154-5 756 ntGCF_034124705::NZ_JAWYAM010000045.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000045.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000045.1All displayed genes belong to this local TCS context.
Neighborhood span1 154-5 756 nt4 603 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 154 nt5 756 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS10870GCF_034124705#U0E26_RS10870
RRRpfGCurrent focus
1 154-2 806 nt · Forward (+)
U0E26_RS10880GCF_034124705#U0E26_RS10880
HKHybrid
3 198-5 756 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS26870Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0073849
Simplified PFAM architecture for RROC_0073849
PFAM domain coverage: 390 / 550 aa (70.9%)
1 aa550 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[6-112] | HD_5[185-323] | GGDEF[390-533]
- Domain count: 3
- Matched identifier: RROC_0073849
- Positioned domains: Response_reg 6-112 ; Response_reg 6-112 ; HD_5 185-323 ; HD_5 185-323 ; GGDEF 390-533 ; GGDEF 390-533
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS26870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key