1 HisKA#1
353-419 aa · 67 aa · 7.8% of protein
Raw token
HisKA:353:4.94e-16:419:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS10120
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034124705
ClassHKTypeHybridLength864 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS10120Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length864 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage417 / 864 aa (48.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa864 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
466-584 aa · 119 aa · 13.8% of protein
Raw token
HATPase_c:466:3.99e-30:584:119:1093 Response_reg#3
599-715 aa · 117 aa · 13.5% of protein
Raw token
Response_reg:599:1.04e-22:715:117:1114 Response_reg#4
741-854 aa · 114 aa · 13.2% of protein
Raw token
Response_reg:741:1.67e-28:854:114:111- Raw architecture: HisKA:353:4.94e-16:419:67:64#HATPase_c:466:3.99e-30:584:119:109#Response_reg:599:1.04e-22:715:117:111#Response_reg:741:1.67e-28:854:114:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000040.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span135308-141707Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000040.1::G00054Context members
U0E26_RS10115U0E26_RS10120
Partner locus tags
U0E26_RS10115U0E26_RS10120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466298.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DCR0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DCR0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS10120Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000040.1Sequence record reported by the local genomic context database.
Genomic interval139 113-141 707 nt2 595 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span135 308-141 707 ntGCF_034124705::NZ_JAWYAM010000040.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000040.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000040.1All displayed genes belong to this local TCS context.
Neighborhood span135 308-141 707 nt6 400 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 308 nt141 707 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS10115GCF_034124705#U0E26_RS10115
RRRpfG
135 308-139 126 nt · Forward (+)
U0E26_RS10120GCF_034124705#U0E26_RS10120
HKHybridCurrent focus
139 113-141 707 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS28980Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0466149
Simplified PFAM architecture for HKOC_0466149
PFAM domain coverage: 415 / 864 aa (48.0%)
1 aa864 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[353-419] | HATPase_c[466-580] | Response_reg[599-714] | Response_reg[741-857]
- Domain count: 4
- Matched identifier: HKOC_0466149
- Positioned domains: HisKA 353-419 ; HATPase_c 466-580 ; Response_reg 599-714 ; Response_reg 741-857
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS28980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key