1 HAMP#1
312-381 aa · 70 aa · 11.6% of protein
Raw token
HAMP:312:0.000000000000187:381:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS09810
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS09810Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 601 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation3 items
2 His_kinase#2
396-471 aa · 76 aa · 12.6% of protein
Raw token
His_kinase:396:2.21e-29:471:76:803 HATPase_c#3
488-600 aa · 113 aa · 18.8% of protein
Raw token
HATPase_c:488:3.68e-18:600:115:109- Raw architecture: HAMP:312:0.000000000000187:381:70:69#His_kinase:396:2.21e-29:471:76:80#HATPase_c:488:3.68e-18:600:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000040.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72618-76056Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000040.1::G00053Context members
U0E26_RS09805U0E26_RS09810
Partner locus tags
U0E26_RS09805U0E26_RS09810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002604187.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P9K8Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P9K8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS09810Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000040.1Sequence record reported by the local genomic context database.
Genomic interval74 251-76 056 nt1 806 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 618-76 056 ntGCF_034124705::NZ_JAWYAM010000040.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000040.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000040.1All displayed genes belong to this local TCS context.
Neighborhood span72 618-76 056 nt3 439 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 618 nt76 056 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS09805GCF_034124705#U0E26_RS09805
RRunclassified
72 618-74 222 nt · Reverse (-)
U0E26_RS09810GCF_034124705#U0E26_RS09810
HKClassicCurrent focus
74 251-76 056 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS22035Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1047625
Simplified PFAM architecture for HKOC_1047625
PFAM domain coverage: 233 / 601 aa (38.8%)
1 aa601 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[329-380] | His_kinase[397-471] | HATPase_c[495-600]
- Domain count: 3
- Matched identifier: HKOC_1047625
- Positioned domains: HAMP 329-380 ; His_kinase 397-471 ; HATPase_c 495-600
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS22035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key