1 HAMP#1
282-351 aa · 70 aa · 12.0% of protein
Raw token
HAMP:282:9.47e-16:351:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS09630
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength581 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS09630Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length581 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage265 / 581 aa (45.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa581 aa
Domain-by-domain annotation3 items
2 His_kinase#2
367-444 aa · 78 aa · 13.4% of protein
Raw token
His_kinase:367:6.38e-29:444:79:803 HATPase_c#3
461-577 aa · 117 aa · 20.1% of protein
Raw token
HATPase_c:461:0.00000000000000235:577:117:109- Raw architecture: HAMP:282:9.47e-16:351:70:69#His_kinase:367:6.38e-29:444:79:80#HATPase_c:461:0.00000000000000235:577:117:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000040.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29152-31663Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000040.1::G00051Context members
U0E26_RS09630U0E26_RS09635
Partner locus tags
U0E26_RS09630U0E26_RS09635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466272.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DFN8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DFN8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS09630Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000040.1Sequence record reported by the local genomic context database.
Genomic interval29 152-30 897 nt1 746 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 152-31 663 ntGCF_034124705::NZ_JAWYAM010000040.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000040.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000040.1All displayed genes belong to this local TCS context.
Neighborhood span29 152-31 663 nt2 512 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 152 nt31 663 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS09630GCF_034124705#U0E26_RS09630
HKClassicCurrent focus
29 152-30 897 nt · Forward (+)
U0E26_RS09635GCF_034124705#U0E26_RS09635
RRunclassified
30 899-31 663 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS27430Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1157776
Simplified PFAM architecture for HKOC_1157776
PFAM domain coverage: 244 / 581 aa (42.0%)
1 aa581 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[300-350] | His_kinase[367-444] | HATPase_c[462-576]
- Domain count: 3
- Matched identifier: HKOC_1157776
- Positioned domains: HAMP 300-350 ; His_kinase 367-444 ; HATPase_c 462-576
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS27430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key