1 HAMP#1
181-247 aa · 67 aa · 13.3% of protein
Raw token
HAMP:181:0.00000000000134:247:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS09540
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength503 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS09540Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length503 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 503 aa (47.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa503 aa
Domain-by-domain annotation3 items
2 HisKA#2
272-337 aa · 66 aa · 13.1% of protein
Raw token
HisKA:272:0.00000000013:337:66:643 HATPase_c#3
383-488 aa · 106 aa · 21.1% of protein
Raw token
HATPase_c:383:1.31e-23:488:107:109- Raw architecture: HAMP:181:0.00000000000134:247:67:69#HisKA:272:0.00000000013:337:66:64#HATPase_c:383:1.31e-23:488:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000040.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6302-8459Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000040.1::G00050Context members
U0E26_RS09540U0E26_RS09545
Partner locus tags
U0E26_RS09540U0E26_RS09545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466264.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DDU1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DDU1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS09540Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000040.1Sequence record reported by the local genomic context database.
Genomic interval6 302-7 813 nt1 512 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 302-8 459 ntGCF_034124705::NZ_JAWYAM010000040.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000040.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000040.1All displayed genes belong to this local TCS context.
Neighborhood span6 302-8 459 nt2 158 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 302 nt8 459 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS09540GCF_034124705#U0E26_RS09540
HKClassicCurrent focus
6 302-7 813 nt · Reverse (-)
U0E26_RS09545GCF_034124705#U0E26_RS09545
RROmpR
7 794-8 459 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS27340Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1460097
Simplified PFAM architecture for HKOC_1460097
PFAM domain coverage: 221 / 503 aa (43.9%)
1 aa503 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-247] | HisKA[273-337] | HATPase_c[383-490]
- Domain count: 3
- Matched identifier: HKOC_1460097
- Positioned domains: HAMP 200-247 ; HisKA 273-337 ; HATPase_c 383-490
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS27340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key