1 dCache_1#1
40-259 aa · 220 aa · 36.8% of protein
Raw token
dCache_1:40:0.0000383:259:236:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS07530
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength598 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS07530Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length598 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage486 / 598 aa (81.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa598 aa
Domain-by-domain annotation4 items
2 HAMP#2
278-348 aa · 71 aa · 11.9% of protein
Raw token
HAMP:278:0.0000000000729:348:71:693 His_kinase#3
363-441 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:363:3.85e-26:441:80:804 HATPase_c#4
457-572 aa · 116 aa · 19.4% of protein
Raw token
HATPase_c:457:0.000000000000428:572:122:109- Raw architecture: dCache_1:40:0.0000383:259:236:195#HAMP:278:0.0000000000729:348:71:69#His_kinase:363:3.85e-26:441:80:80#HATPase_c:457:0.000000000000428:572:122:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000033.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span140689-143929Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000033.1::G00045Context members
U0E26_RS07525U0E26_RS07530
Partner locus tags
U0E26_RS07525U0E26_RS07530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002599934.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS07530Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000033.1Sequence record reported by the local genomic context database.
Genomic interval142 133-143 929 nt1 797 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span140 689-143 929 ntGCF_034124705::NZ_JAWYAM010000033.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000033.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000033.1All displayed genes belong to this local TCS context.
Neighborhood span140 689-143 929 nt3 241 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 689 nt143 929 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS07525GCF_034124705#U0E26_RS07525
RRunclassified
140 689-142 161 nt · Reverse (-)
U0E26_RS07530GCF_034124705#U0E26_RS07530
HKClassicCurrent focus
142 133-143 929 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS21315Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1043332
Simplified PFAM architecture for HKOC_1043332
PFAM domain coverage: 235 / 602 aa (39.0%)
1 aa602 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[310-351] | His_kinase[367-445] | HATPase_c[461-574]
- Domain count: 3
- Matched identifier: HKOC_1043332
- Positioned domains: HAMP 310-351 ; His_kinase 367-445 ; HATPase_c 461-574
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS21315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key