1 dCache_1#1
16-163 aa · 148 aa · 25.0% of protein
Raw token
dCache_1:16:0.0000633:163:161:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS07380
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034124705
ClassHKTypeHybridLength593 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124705#U0E26_RS07380Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage444 / 593 aa (74.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation4 items
2 HisKA#2
214-279 aa · 66 aa · 11.1% of protein
Raw token
HisKA:214:1.2e-18:279:66:643 HATPase_c#3
326-438 aa · 113 aa · 19.1% of protein
Raw token
HATPase_c:326:3.37e-27:438:113:1094 Response_reg#4
468-584 aa · 117 aa · 19.7% of protein
Raw token
Response_reg:468:2.87e-27:584:117:111- Raw architecture: dCache_1:16:0.0000633:163:161:195#HisKA:214:1.2e-18:279:66:64#HATPase_c:326:3.37e-27:438:113:109#Response_reg:468:2.87e-27:584:117:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124705::NZ_JAWYAM010000033.1::G00042
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span103701-105482Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000033.1::G00042Context members
U0E26_RS07380
Partner locus tags
U0E26_RS07380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320998598.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS07380Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000033.1Sequence record reported by the local genomic context database.
Genomic interval103 701-105 482 nt1 782 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 701-105 482 ntGCF_034124705::NZ_JAWYAM010000033.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000033.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000033.1All displayed genes belong to this local TCS context.
Neighborhood span103 701-105 482 nt1 782 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 701 nt105 482 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E26_RS07380GCF_034124705#U0E26_RS07380
HKHybridCurrent focus
103 701-105 482 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034124705#U0E26_RS07380The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1097108
Simplified PFAM architecture for HKOC_1097108
PFAM domain coverage: 296 / 593 aa (49.9%)
1 aa593 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[214-279] | HATPase_c[326-438] | Response_reg[468-584]
- Domain count: 3
- Matched identifier: HKOC_1097108
- Positioned domains: HisKA 214-279 ; HATPase_c 326-438 ; Response_reg 468-584
Cluster members and taxonomy
Representative gene: GCF_034124705#U0E26_RS07380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key