1 Response_reg#1
5-114 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:5:1.15e-33:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS07325
Response regulator OmpR family
Hungatella effluvii · GCF_034124705
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS07325Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 236 aa (76.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-229 aa · 71 aa · 30.1% of protein
Raw token
Trans_reg_C:159:9.86e-16:229:72:77- Raw architecture: Response_reg:5:1.15e-33:114:111:111#Trans_reg_C:159:9.86e-16:229:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000033.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91689-93830Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000033.1::G00041Context members
U0E26_RS07320U0E26_RS07325
Partner locus tags
U0E26_RS07320U0E26_RS07325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_029466163.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS07325Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000033.1Sequence record reported by the local genomic context database.
Genomic interval93 120-93 830 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span91 689-93 830 ntGCF_034124705::NZ_JAWYAM010000033.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000033.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000033.1All displayed genes belong to this local TCS context.
Neighborhood span91 689-93 830 nt2 142 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 689 nt93 830 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS07320GCF_034124705#U0E26_RS07320
HKClassic
91 689-93 116 nt · Reverse (-)
U0E26_RS07325GCF_034124705#U0E26_RS07325
RROmpRCurrent focus
93 120-93 830 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS21105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0713829
Simplified PFAM architecture for RROC_0713829
PFAM domain coverage: 184 / 251 aa (73.3%)
1 aa251 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[20-129] | Trans_reg_C[171-244]
- Domain count: 2
- Matched identifier: RROC_0713829
- Positioned domains: Response_reg 20-129 ; Response_reg 20-129 ; Trans_reg_C 171-244 ; Trans_reg_C 171-244
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS21105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key