1 PAS_3#1
11-96 aa · 86 aa · 9.6% of protein
Raw token
PAS_3:11:0.000000000862:96:87:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS07095
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034124705
ClassHKTypeHybridLength893 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124705#U0E26_RS07095Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_3PAS_9HisKAHATPase_cResponse_reg
Protein length893 aaLength used to scale native and Biotite-like views.
Annotated domains77 with usable coordinates.
Domain coverage645 / 893 aa (72.2%)Merged over positioned domains only.
Domain description2 PAS_3,1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa893 aa
Domain-by-domain annotation7 items
2 PAS_9#2
132-207 aa · 76 aa · 8.5% of protein
Raw token
PAS_9:132:0.0000274:207:77:1023 PAS_3#3
262-341 aa · 80 aa · 9.0% of protein
Raw token
PAS_3:262:0.00000329:341:80:894 HisKA#4
382-448 aa · 67 aa · 7.5% of protein
Raw token
HisKA:382:5.52e-17:448:67:645 HATPase_c#5
495-607 aa · 113 aa · 12.7% of protein
Raw token
HATPase_c:495:8.09e-29:607:113:1096 Response_reg#6
629-734 aa · 106 aa · 11.9% of protein
Raw token
Response_reg:629:8.88e-24:734:108:1117 Response_reg#7
773-889 aa · 117 aa · 13.1% of protein
Raw token
Response_reg:773:1.97e-26:889:117:111- Raw architecture: PAS_3:11:0.000000000862:96:87:89#PAS_9:132:0.0000274:207:77:102#PAS_3:262:0.00000329:341:80:89#HisKA:382:5.52e-17:448:67:64#HATPase_c:495:8.09e-29:607:113:109#Response_reg:629:8.88e-24:734:108:111#Response_reg:773:1.97e-26:889:117:111
- Domain description: 2 PAS_3,1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124705::NZ_JAWYAM010000033.1::G00039
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span40255-42963Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000033.1::G00039Context members
U0E26_RS07095
Partner locus tags
U0E26_RS07095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_034561485.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DHN7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DHN7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS07095Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000033.1Sequence record reported by the local genomic context database.
Genomic interval40 255-42 963 nt2 709 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 255-42 963 ntGCF_034124705::NZ_JAWYAM010000033.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000033.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000033.1All displayed genes belong to this local TCS context.
Neighborhood span40 255-42 963 nt2 709 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 255 nt42 963 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E26_RS07095GCF_034124705#U0E26_RS07095
HKHybridCurrent focus
40 255-42 963 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034124445#U0C54_RS09575Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0399729
Simplified PFAM architecture for HKOC_0399729
PFAM domain coverage: 537 / 905 aa (59.3%)
1 aa905 aa
PAS_3PAS_9HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[23-99] | PAS_9[145-193] | HisKA[394-460] | HATPase_c[508-621] | Response_reg[641-754] | Response_reg[785-900]
- Domain count: 6
- Matched identifier: HKOC_0399729
- Positioned domains: PAS_3 23-99 ; PAS_9 145-193 ; HisKA 394-460 ; HATPase_c 508-621 ; Response_reg 641-754 ; Response_reg 785-900
Cluster members and taxonomy
Representative gene: GCF_034124445#U0C54_RS09575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key