1 HAMP#1
302-370 aa · 69 aa · 11.3% of protein
Raw token
HAMP:302:0.0000000000252:370:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS05840
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength613 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034124705#U0E26_RS05840Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length613 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 613 aa (41.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa613 aa
Domain-by-domain annotation3 items
2 His_kinase#2
387-463 aa · 77 aa · 12.6% of protein
Raw token
His_kinase:387:2.5e-29:463:77:803 HATPase_c#3
486-594 aa · 109 aa · 17.8% of protein
Raw token
HATPase_c:486:0.000000000000201:594:111:109- Raw architecture: HAMP:302:0.0000000000252:370:69:69#His_kinase:387:2.5e-29:463:77:80#HATPase_c:486:0.000000000000201:594:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034124705::NZ_JAWYAM010000022.1::G00034
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span11690-17770Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000022.1::G00034Context members
U0E26_RS05840U0E26_RS05845U0E26_RS05855U0E26_RS05860
Partner locus tags
U0E26_RS05840U0E26_RS05845U0E26_RS05855U0E26_RS05860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025532034.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS05840Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000022.1Sequence record reported by the local genomic context database.
Genomic interval11 690-13 531 nt1 842 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 690-17 770 ntGCF_034124705::NZ_JAWYAM010000022.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000022.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000022.1All displayed genes belong to this local TCS context.
Neighborhood span11 690-17 770 nt6 081 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 690 nt17 770 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0E26_RS05840GCF_034124705#U0E26_RS05840
HKClassicCurrent focus
11 690-13 531 nt · Forward (+)
U0E26_RS05845GCF_034124705#U0E26_RS05845
RRunclassified
13 546-15 000 nt · Forward (+)
U0E26_RS05855GCF_034124705#U0E26_RS05855
HKClassic
15 287-16 756 nt · Forward (+)
U0E26_RS05860GCF_034124705#U0E26_RS05860
RRunclassified
16 856-17 770 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS32400Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0994726
Simplified PFAM architecture for HKOC_0994726
PFAM domain coverage: 224 / 613 aa (36.5%)
1 aa613 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[331-370] | His_kinase[388-463] | HATPase_c[486-593]
- Domain count: 3
- Matched identifier: HKOC_0994726
- Positioned domains: HAMP 331-370 ; His_kinase 388-463 ; HATPase_c 486-593
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS32400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key