1 His_kinase#1
416-496 aa · 81 aa · 13.1% of protein
Raw token
His_kinase:416:8.08e-26:496:82:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS05430
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength616 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS05430Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length616 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 616 aa (28.4%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa616 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
514-607 aa · 94 aa · 15.3% of protein
Raw token
HATPase_c:514:0.0000000000045:607:106:109- Raw architecture: His_kinase:416:8.08e-26:496:82:80#HATPase_c:514:0.0000000000045:607:106:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000016.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28979-31613Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000016.1::G00031Context members
U0E26_RS05425U0E26_RS05430
Partner locus tags
U0E26_RS05425U0E26_RS05430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025531589.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS05430Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000016.1Sequence record reported by the local genomic context database.
Genomic interval29 763-31 613 nt1 851 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 979-31 613 ntGCF_034124705::NZ_JAWYAM010000016.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000016.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000016.1All displayed genes belong to this local TCS context.
Neighborhood span28 979-31 613 nt2 635 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 979 nt31 613 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS05425GCF_034124705#U0E26_RS05425
RRunclassified
28 979-29 782 nt · Reverse (-)
U0E26_RS05430GCF_034124705#U0E26_RS05430
HKClassicCurrent focus
29 763-31 613 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS34955Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0986158
Simplified PFAM architecture for HKOC_0986158
PFAM domain coverage: 172 / 616 aa (27.9%)
1 aa616 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[418-496] | HATPase_c[514-606]
- Domain count: 2
- Matched identifier: HKOC_0986158
- Positioned domains: His_kinase 418-496 ; HATPase_c 514-606
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS34955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key