1 Response_reg#1
3-113 aa · 111 aa · 41.6% of protein
Raw token
Response_reg:3:4.47e-23:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS05425
Response regulator, unclassified
Hungatella effluvii · GCF_034124705
ClassRRTypeunclassifiedLength267 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS05425Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length267 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 267 aa (41.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa267 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:4.47e-23:113:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000016.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28979-31613Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000016.1::G00031Context members
U0E26_RS05425U0E26_RS05430
Partner locus tags
U0E26_RS05425U0E26_RS05430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025531590.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DBK2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DBK2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS05425Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000016.1Sequence record reported by the local genomic context database.
Genomic interval28 979-29 782 nt804 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 979-31 613 ntGCF_034124705::NZ_JAWYAM010000016.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000016.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000016.1All displayed genes belong to this local TCS context.
Neighborhood span28 979-31 613 nt2 635 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 979 nt31 613 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS05425GCF_034124705#U0E26_RS05425
RRunclassifiedCurrent focus
28 979-29 782 nt · Reverse (-)
U0E26_RS05430GCF_034124705#U0E26_RS05430
HKClassic
29 763-31 613 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS31355Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0623631
Simplified PFAM architecture for RROC_0623631
PFAM domain coverage: 110 / 267 aa (41.2%)
1 aa267 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-112]
- Domain count: 1
- Matched identifier: RROC_0623631
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS31355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key