1 HAMP#1
207-274 aa · 68 aa · 13.5% of protein
Raw token
HAMP:207:0.0000000000000267:274:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS04605
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength504 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124705#U0E26_RS04605Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length504 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 504 aa (49.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa504 aa
Domain-by-domain annotation3 items
2 His_kinase#2
291-368 aa · 78 aa · 15.5% of protein
Raw token
His_kinase:291:1.79e-31:368:78:803 HATPase_c#3
388-490 aa · 103 aa · 20.4% of protein
Raw token
HATPase_c:388:0.00000000000000123:490:105:109- Raw architecture: HAMP:207:0.0000000000000267:274:68:69#His_kinase:291:1.79e-31:368:78:80#HATPase_c:388:0.00000000000000123:490:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124705::NZ_JAWYAM010000013.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span100953-102467Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000013.1::G00027Context members
U0E26_RS04605
Partner locus tags
U0E26_RS04605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466069.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DJT1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DJT1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS04605Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000013.1Sequence record reported by the local genomic context database.
Genomic interval100 953-102 467 nt1 515 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span100 953-102 467 ntGCF_034124705::NZ_JAWYAM010000013.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000013.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000013.1All displayed genes belong to this local TCS context.
Neighborhood span100 953-102 467 nt1 515 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 953 nt102 467 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E26_RS04605GCF_034124705#U0E26_RS04605
HKClassicCurrent focus
100 953-102 467 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS15985Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1455197
Simplified PFAM architecture for HKOC_1455197
PFAM domain coverage: 230 / 504 aa (45.6%)
1 aa504 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[226-273] | His_kinase[290-366] | HATPase_c[387-491]
- Domain count: 3
- Matched identifier: HKOC_1455197
- Positioned domains: HAMP 226-273 ; His_kinase 290-366 ; HATPase_c 387-491
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS15985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key