1 His_kinase#1
358-438 aa · 81 aa · 14.5% of protein
Raw token
His_kinase:358:3.86e-24:438:81:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS04560
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength558 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS04560Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length558 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 558 aa (32.8%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa558 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
454-555 aa · 102 aa · 18.3% of protein
Raw token
HATPase_c:454:0.0000000755:555:107:109- Raw architecture: His_kinase:358:3.86e-24:438:81:80#HATPase_c:454:0.0000000755:555:107:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000013.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88843-91757Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000013.1::G00025Context members
U0E26_RS04560U0E26_RS04565
Partner locus tags
U0E26_RS04560U0E26_RS04565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466073.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DKS8Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DKS8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS04560Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000013.1Sequence record reported by the local genomic context database.
Genomic interval88 843-90 519 nt1 677 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span88 843-91 757 ntGCF_034124705::NZ_JAWYAM010000013.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000013.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000013.1All displayed genes belong to this local TCS context.
Neighborhood span88 843-91 757 nt2 915 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 843 nt91 757 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS04560GCF_034124705#U0E26_RS04560
HKClassicCurrent focus
88 843-90 519 nt · Reverse (-)
U0E26_RS04565GCF_034124705#U0E26_RS04565
RRunclassified
90 528-91 757 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS16030Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1265621
Simplified PFAM architecture for HKOC_1265621
PFAM domain coverage: 183 / 558 aa (32.8%)
1 aa558 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[358-438] | HATPase_c[454-555]
- Domain count: 2
- Matched identifier: HKOC_1265621
- Positioned domains: His_kinase 358-438 ; HATPase_c 454-555
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS16030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key