1 dCache_1#1
33-266 aa · 234 aa · 40.6% of protein
Raw token
dCache_1:33:0.00000407:266:248:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS04400
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_034124705#U0E26_RS04400Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage492 / 577 aa (85.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation4 items
2 HAMP#2
285-354 aa · 70 aa · 12.1% of protein
Raw token
HAMP:285:0.000000000687:354:70:693 His_kinase#3
369-448 aa · 80 aa · 13.9% of protein
Raw token
His_kinase:369:3.83e-28:448:80:804 HATPase_c#4
465-572 aa · 108 aa · 18.7% of protein
Raw token
HATPase_c:465:0.00000000955:572:111:109- Raw architecture: dCache_1:33:0.00000407:266:248:195#HAMP:285:0.000000000687:354:70:69#His_kinase:369:3.83e-28:448:80:80#HATPase_c:465:0.00000000955:572:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_034124705::NZ_JAWYAM010000013.1::G00023
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span48534-53716Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000013.1::G00023Context members
U0E26_RS04390U0E26_RS04395U0E26_RS04400
Partner locus tags
U0E26_RS04390U0E26_RS04395U0E26_RS04400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147334415.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS04400Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000013.1Sequence record reported by the local genomic context database.
Genomic interval51 983-53 716 nt1 734 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span48 534-53 716 ntGCF_034124705::NZ_JAWYAM010000013.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000013.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000013.1All displayed genes belong to this local TCS context.
Neighborhood span48 534-53 716 nt5 183 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 534 nt53 716 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
U0E26_RS04390GCF_034124705#U0E26_RS04390
RRPleD_VieA
48 534-50 222 nt · Reverse (-)
U0E26_RS04395GCF_034124705#U0E26_RS04395
RRunclassified
50 452-51 993 nt · Reverse (-)
U0E26_RS04400GCF_034124705#U0E26_RS04400
HKClassicCurrent focus
51 983-53 716 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS16205Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1178457
Simplified PFAM architecture for HKOC_1178457
PFAM domain coverage: 181 / 577 aa (31.4%)
1 aa577 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[369-446] | HATPase_c[466-568]
- Domain count: 2
- Matched identifier: HKOC_1178457
- Positioned domains: His_kinase 369-446 ; HATPase_c 466-568
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS16205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key