1 Response_reg#1
4-117 aa · 114 aa · 22.4% of protein
Raw token
Response_reg:4:1.82e-28:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS03465
Response regulator, unclassified
Hungatella effluvii · GCF_034124705
ClassRRTypeunclassifiedLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS03465Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage183 / 509 aa (36.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
401-438 aa · 38 aa · 7.5% of protein
Raw token
HTH_AraC:401:0.000000292:438:38:423 HTH_AraC#3
461-491 aa · 31 aa · 6.1% of protein
Raw token
HTH_AraC:461:0.000000424:491:31:42- Raw architecture: Response_reg:4:1.82e-28:117:114:111#HTH_AraC:401:0.000000292:438:38:42#HTH_AraC:461:0.000000424:491:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000010.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23161-26482Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000010.1::G00017Context members
U0E26_RS03465U0E26_RS03470
Partner locus tags
U0E26_RS03465U0E26_RS03470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025529864.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DQI3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DQI3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS03465Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000010.1Sequence record reported by the local genomic context database.
Genomic interval23 161-24 690 nt1 530 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 161-26 482 ntGCF_034124705::NZ_JAWYAM010000010.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000010.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000010.1All displayed genes belong to this local TCS context.
Neighborhood span23 161-26 482 nt3 322 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 161 nt26 482 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS03465GCF_034124705#U0E26_RS03465
RRunclassifiedCurrent focus
23 161-24 690 nt · Reverse (-)
U0E26_RS03470GCF_034124705#U0E26_RS03470
HKClassic
24 692-26 482 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS07770Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0147563
Simplified PFAM architecture for RROC_0147563
PFAM domain coverage: 194 / 509 aa (38.1%)
1 aa509 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[414-494]
- Domain count: 2
- Matched identifier: RROC_0147563
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 414-494 ; HTH_18 414-494
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS07770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key