1 Response_reg#1
7-118 aa · 112 aa · 35.9% of protein
Raw token
Response_reg:7:1.49e-31:118:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS03200
Response regulator, PleD family
Hungatella effluvii · GCF_034124705
ClassRRTypePleDLength312 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS03200Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage265 / 312 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 GGDEF#2
148-300 aa · 153 aa · 49.0% of protein
Raw token
GGDEF:148:1.53e-44:300:160:160- Raw architecture: Response_reg:7:1.49e-31:118:112:111#GGDEF:148:1.53e-44:300:160:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000009.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41016-43906Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000009.1::G00012Context members
U0E26_RS03195U0E26_RS03200
Partner locus tags
U0E26_RS03195U0E26_RS03200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002600338.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS03200Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000009.1Sequence record reported by the local genomic context database.
Genomic interval42 968-43 906 nt939 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 016-43 906 ntGCF_034124705::NZ_JAWYAM010000009.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000009.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000009.1All displayed genes belong to this local TCS context.
Neighborhood span41 016-43 906 nt2 891 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 016 nt43 906 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS03195GCF_034124705#U0E26_RS03195
HKCheA
41 016-42 962 nt · Reverse (-)
U0E26_RS03200GCF_034124705#U0E26_RS03200
RRPleDCurrent focus
42 968-43 906 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS02620Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0547009
Simplified PFAM architecture for RROC_0547009
PFAM domain coverage: 265 / 312 aa (84.9%)
1 aa312 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[7-118] | GGDEF[148-300]
- Domain count: 2
- Matched identifier: RROC_0547009
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; GGDEF 148-300 ; GGDEF 148-300
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS02620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key