1 Response_reg#1
3-112 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:3:2.95e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS683_RS06120
Response regulator OmpR family
Bifidobacterium longum · GCF_034052555
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034052555#RS683_RS06120Stable P2CS identifier used across views.
GenomeGCF_034052555Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.1% of protein
Raw token
Trans_reg_C:151:2.19e-27:225:75:77- Raw architecture: Response_reg:3:2.95e-33:112:111:111#Trans_reg_C:151:2.19e-27:225:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034052555::NZ_CP139152.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1327062-1330614Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034052555::NZ_CP139152.1::G00006Context members
RS683_RS06120RS683_RS06125
Partner locus tags
RS683_RS06120RS683_RS06125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013410856.1Primary protein accession used for annex mappings.
UniProt accessionA0A2U2RQP6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2U2RQP6_BIFLNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS683_RS06120Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP139152.1Sequence record reported by the local genomic context database.
Genomic interval1 327 062-1 327 766 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 327 062-1 330 614 ntGCF_034052555::NZ_CP139152.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034052555::NZ_CP139152.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP139152.1All displayed genes belong to this local TCS context.
Neighborhood span1 327 062-1 330 614 nt3 553 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 327 062 nt1 330 614 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS683_RS06120GCF_034052555#RS683_RS06120
RROmpRCurrent focus
1 327 062-1 327 766 nt · Reverse (-)
RS683_RS06125GCF_034052555#RS683_RS06125
HKClassic
1 327 771-1 330 614 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166315#BBMN68_RS02245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047538
Simplified PFAM architecture for RROC_1047538
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1047538
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_000166315#BBMN68_RS02245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_034052555
AssemblyASM3405255v1 · Chromosomehaploid
Genome composition2 445 297 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key