1 HisKA_3#1
86-149 aa · 64 aa · 19.9% of protein
Raw token
HisKA_3:86:0.0000000000000172:149:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS662_RS02580
Histidine kinase, Classic
Bifidobacterium longum · GCF_034052395
ClassHKTypeClassicLength321 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034052395#RS662_RS02580Stable P2CS identifier used across views.
GenomeGCF_034052395Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length321 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 321 aa (57.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa321 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-314 aa · 119 aa · 37.1% of protein
Raw token
HATPase_c:196:0.000000166:314:120:109- Raw architecture: HisKA_3:86:0.0000000000000172:149:64:68#HATPase_c:196:0.000000166:314:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034052395::NZ_CP139151.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span530958-532578Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034052395::NZ_CP139151.1::G00002Context members
RS662_RS02580RS662_RS02585
Partner locus tags
RS662_RS02580RS662_RS02585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242096600.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS662_RS02580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP139151.1Sequence record reported by the local genomic context database.
Genomic interval530 958-531 925 nt968 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span530 958-532 578 ntGCF_034052395::NZ_CP139151.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034052395::NZ_CP139151.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP139151.1All displayed genes belong to this local TCS context.
Neighborhood span530 958-532 578 nt1 621 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
530 958 nt532 578 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS662_RS02580GCF_034052395#RS662_RS02580
HKClassicCurrent focus
530 958-531 925 nt · Forward (+)
RS662_RS02585GCF_034052395#RS662_RS02585
RRNarL
531 925-532 578 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022644225#G8B11_RS06485Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1967908
Simplified PFAM architecture for HKOC_1967908
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1967908
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_022644225#G8B11_RS06485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_034052395
AssemblyASM3405239v1 · Chromosomehaploid
Genome composition2 361 455 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key