1 SBP_bac_3#1
58-278 aa · 221 aa · 33.3% of protein
Raw token
SBP_bac_3:58:1.71e-42:278:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SIK57_RS13820
Histidine kinase, Classic
Clostridioides difficile · GCF_033841425
ClassHKTypeClassicLength664 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033841425#SIK57_RS13820Stable P2CS identifier used across views.
GenomeGCF_033841425Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length664 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage386 / 664 aa (58.1%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa664 aa
Domain-by-domain annotation3 items
2 HisKA#2
446-508 aa · 63 aa · 9.5% of protein
Raw token
HisKA:446:0.0000000000000422:508:63:643 HATPase_c#3
557-658 aa · 102 aa · 15.4% of protein
Raw token
HATPase_c:557:2.45e-23:658:103:109- Raw architecture: SBP_bac_3:58:1.71e-42:278:230:224#HisKA:446:0.0000000000000422:508:63:64#HATPase_c:557:2.45e-23:658:103:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033841425::NZ_JAWXSM010000026.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56675-59991Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSIK57_13810RefSeq proteinWP_021371216.1
Context group ID
GCF_033841425::NZ_JAWXSM010000026.1::G00034Context members
SIK57_RS13815SIK57_RS13820
Partner locus tags
SIK57_RS13815SIK57_RS13820
Partner old locus tags
SIK57_13805SIK57_13810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021371216.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSIK57_RS13820Primary locus identifier stored in the genes table.
Old locus tagSIK57_13810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXSM010000026.1Sequence record reported by the local genomic context database.
Genomic interval57 997-59 991 nt1 995 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span56 675-59 991 ntGCF_033841425::NZ_JAWXSM010000026.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033841425::NZ_JAWXSM010000026.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXSM010000026.1All displayed genes belong to this local TCS context.
Neighborhood span56 675-59 991 nt3 317 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 675 nt59 991 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SIK57_RS13815GCF_033841425#SIK57_RS13815
RRNtrC
56 675-57 997 nt · Reverse (-)
SIK57_RS13820GCF_033841425#SIK57_RS13820
HKClassicCurrent focus
57 997-59 991 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449045#QCI_RS08800Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0860371
Simplified PFAM architecture for HKOC_0860371
PFAM domain coverage: 385 / 664 aa (58.0%)
1 aa664 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[60-277] | HisKA[448-509] | HATPase_c[555-659]
- Domain count: 3
- Matched identifier: HKOC_0860371
- Positioned domains: SBP_bac_3 60-277 ; HisKA 448-509 ; HATPase_c 555-659
Cluster members and taxonomy
Representative gene: GCF_000449045#QCI_RS08800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033841425
AssemblyASM3384142v1 · Contighaploid
Genome composition4 185 598 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key