1 HisKA#1
107-171 aa · 65 aa · 19.9% of protein
Raw token
HisKA:107:0.00000000000000617:171:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SIK57_RS08890
Histidine kinase, Classic
Clostridioides difficile · GCF_033841425
ClassHKTypeClassicLength326 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033841425#SIK57_RS08890Stable P2CS identifier used across views.
GenomeGCF_033841425Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length326 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 326 aa (54.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa326 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
216-326 aa · 111 aa · 34.0% of protein
Raw token
HATPase_c:216:6.89e-22:326:111:109- Raw architecture: HisKA:107:0.00000000000000617:171:65:64#HATPase_c:216:6.89e-22:326:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033841425::NZ_JAWXSM010000013.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25825-27836Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSIK57_08885RefSeq proteinWP_320076306.1
Context group ID
GCF_033841425::NZ_JAWXSM010000013.1::G00010Context members
SIK57_RS08890SIK57_RS08895
Partner locus tags
SIK57_RS08890SIK57_RS08895
Partner old locus tags
SIK57_08885SIK57_08890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320076306.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSIK57_RS08890Primary locus identifier stored in the genes table.
Old locus tagSIK57_08885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXSM010000013.1Sequence record reported by the local genomic context database.
Genomic interval25 825-26 805 nt981 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 825-27 836 ntGCF_033841425::NZ_JAWXSM010000013.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033841425::NZ_JAWXSM010000013.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXSM010000013.1All displayed genes belong to this local TCS context.
Neighborhood span25 825-27 836 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 825 nt27 836 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SIK57_RS08890GCF_033841425#SIK57_RS08890
HKClassicCurrent focus
25 825-26 805 nt · Reverse (-)
SIK57_RS08895GCF_033841425#SIK57_RS08895
RROmpR
27 177-27 836 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033841425#SIK57_RS08890The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2863551
Simplified PFAM architecture for HKOC_2863551
PFAM domain coverage: 176 / 326 aa (54.0%)
1 aa326 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[107-171] | HATPase_c[216-326]
- Domain count: 2
- Matched identifier: HKOC_2863551
- Positioned domains: HisKA 107-171 ; HATPase_c 216-326
Cluster members and taxonomy
Representative gene: GCF_033841425#SIK57_RS08890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033841425
AssemblyASM3384142v1 · Contighaploid
Genome composition4 185 598 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key