1 Response_reg#1
5-104 aa · 100 aa · 96.2% of protein
Raw token
Response_reg:5:3.59e-20:104:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SIK60_RS00615
Response regulator, CheY family
Clostridioides difficile · GCF_033841335
ClassRRTypeCheYLength104 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033841335#SIK60_RS00615Stable P2CS identifier used across views.
GenomeGCF_033841335Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length104 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage100 / 104 aa (96.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa104 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:3.59e-20:104:101:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033841335::NZ_JAWXSG010000002.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73931-74244Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSIK60_00615RefSeq proteinWP_320073280.1
Context group ID
GCF_033841335::NZ_JAWXSG010000002.1::G00033Context members
SIK60_RS00615
Partner locus tags
SIK60_RS00615
Partner old locus tags
SIK60_00615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320073280.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSIK60_RS00615Primary locus identifier stored in the genes table.
Old locus tagSIK60_00615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXSG010000002.1Sequence record reported by the local genomic context database.
Genomic interval73 931-74 244 nt314 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 931-74 244 ntGCF_033841335::NZ_JAWXSG010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033841335::NZ_JAWXSG010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXSG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span73 931-74 244 nt314 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 931 nt74 244 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SIK60_RS00615GCF_033841335#SIK60_RS00615
RRCheYCurrent focus
73 931-74 244 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033841335#SIK60_RS00615The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2470842
Simplified PFAM architecture for RROC_2470842
PFAM domain coverage: 99 / 104 aa (95.2%)
1 aa104 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-103]
- Domain count: 1
- Matched identifier: RROC_2470842
- Positioned domains: Response_reg 5-103
Cluster members and taxonomy
Representative gene: GCF_033841335#SIK60_RS00615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033841335
AssemblyASM3384133v1 · Contighaploid
Genome composition4 087 268 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key