1 Response_reg#1
13-124 aa · 112 aa · 34.7% of protein
Raw token
Response_reg:13:2.04e-28:124:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SIK64_RS08865
Response regulator, PleD family
Clostridioides difficile · GCF_033840625
ClassRRTypePleDLength323 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033840625#SIK64_RS08865Stable P2CS identifier used across views.
GenomeGCF_033840625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length323 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage267 / 323 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa323 aa
Domain-by-domain annotation2 items
2 GGDEF#2
157-311 aa · 155 aa · 48.0% of protein
Raw token
GGDEF:157:8.78e-48:311:158:160- Raw architecture: Response_reg:13:2.04e-28:124:112:111#GGDEF:157:8.78e-48:311:158:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033840625::NZ_JAWXRQ010000107.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-974Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSIK64_08860RefSeq proteinWP_320061781.1
Context group ID
GCF_033840625::NZ_JAWXRQ010000107.1::G00001Context members
SIK64_RS08865
Partner locus tags
SIK64_RS08865
Partner old locus tags
SIK64_08860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320061781.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSIK64_RS08865Primary locus identifier stored in the genes table.
Old locus tagSIK64_08860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXRQ010000107.1Sequence record reported by the local genomic context database.
Genomic interval1-974 nt974 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-974 ntGCF_033840625::NZ_JAWXRQ010000107.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033840625::NZ_JAWXRQ010000107.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXRQ010000107.1All displayed genes belong to this local TCS context.
Neighborhood span1-974 nt974 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt974 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SIK64_RS08865GCF_033840625#SIK64_RS08865
RRPleDCurrent focus
1-974 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033840625#SIK64_RS08865The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0528365
Simplified PFAM architecture for RROC_0528365
PFAM domain coverage: 266 / 323 aa (82.4%)
1 aa323 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[13-124] | GGDEF[157-310]
- Domain count: 2
- Matched identifier: RROC_0528365
- Positioned domains: Response_reg 13-124 ; GGDEF 157-310
Cluster members and taxonomy
Representative gene: GCF_033840625#SIK64_RS08865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033840625
AssemblyASM3384062v1 · Contighaploid
Genome composition3 848 838 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 81 · HK 35 · RR 45CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key