1 Response_reg#1
1-88 aa · 88 aa · 42.5% of protein
Raw token
Response_reg:1:1.55e-26:88:89:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SIK40_RS11955
Response regulator OmpR family
Clostridioides difficile · GCF_033840485
ClassRRTypeOmpRLength207 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033840485#SIK40_RS11955Stable P2CS identifier used across views.
GenomeGCF_033840485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length207 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 207 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa207 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
129-203 aa · 75 aa · 36.2% of protein
Raw token
Trans_reg_C:129:3.83e-35:203:75:77- Raw architecture: Response_reg:1:1.55e-26:88:89:111#Trans_reg_C:129:3.83e-35:203:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033840485::NZ_JAWXRN010000242.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1758Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSIK40_11970RefSeq proteinWP_320070474.1
Context group ID
GCF_033840485::NZ_JAWXRN010000242.1::G00011Context members
SIK40_RS11955SIK40_RS11960
Partner locus tags
SIK40_RS11955SIK40_RS11960
Partner old locus tags
SIK40_11970SIK40_11975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320070474.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSIK40_RS11955Primary locus identifier stored in the genes table.
Old locus tagSIK40_11970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXRN010000242.1Sequence record reported by the local genomic context database.
Genomic interval1-626 nt626 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 758 ntGCF_033840485::NZ_JAWXRN010000242.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033840485::NZ_JAWXRN010000242.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXRN010000242.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 758 nt1 758 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 758 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SIK40_RS11955GCF_033840485#SIK40_RS11955
RROmpRCurrent focus
1-626 nt · Forward (+)
SIK40_RS11960GCF_033840485#SIK40_RS11960
HKClassic
676-1 758 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS08860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080372
Simplified PFAM architecture for RROC_1080372
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1080372
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS08860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033840485
AssemblyASM3384048v1 · Contighaploid
Genome composition3 931 618 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 91 · HK 39 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key