1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:4.72e-31:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SIK48_RS08125
Response regulator OmpR family
Clostridioides difficile · GCF_033840445
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033840445#SIK48_RS08125Stable P2CS identifier used across views.
GenomeGCF_033840445Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 33.6% of protein
Raw token
Trans_reg_C:145:3.84e-28:219:75:77- Raw architecture: Response_reg:4:4.72e-31:112:110:111#Trans_reg_C:145:3.84e-28:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033840445::NZ_JAWXRM010000045.1::G00037
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span24819-25490Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSIK48_08140RefSeq proteinWP_065977859.1
Context group ID
GCF_033840445::NZ_JAWXRM010000045.1::G00037Context members
SIK48_RS08125
Partner locus tags
SIK48_RS08125
Partner old locus tags
SIK48_08140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065977859.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSIK48_RS08125Primary locus identifier stored in the genes table.
Old locus tagSIK48_08140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXRM010000045.1Sequence record reported by the local genomic context database.
Genomic interval24 819-25 490 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 819-25 490 ntGCF_033840445::NZ_JAWXRM010000045.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033840445::NZ_JAWXRM010000045.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXRM010000045.1All displayed genes belong to this local TCS context.
Neighborhood span24 819-25 490 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 819 nt25 490 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SIK48_RS08125GCF_033840445#SIK48_RS08125
RROmpRCurrent focus
24 819-25 490 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001704795#DCQ01_RS11690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1595020
Simplified PFAM architecture for RROC_1595020
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-218]
- Domain count: 2
- Matched identifier: RROC_1595020
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-218 ; Trans_reg_C 145-218
Cluster members and taxonomy
Representative gene: GCF_001704795#DCQ01_RS11690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033840445
AssemblyASM3384044v1 · Contighaploid
Genome composition3 979 416 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 90 · HK 42 · RR 47CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key