1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:2.38e-29:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SIK48_RS08115
Response regulator OmpR family
Clostridioides difficile · GCF_033840445
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033840445#SIK48_RS08115Stable P2CS identifier used across views.
GenomeGCF_033840445Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:146:9.22e-24:221:78:77- Raw architecture: Response_reg:4:2.38e-29:113:111:111#Trans_reg_C:146:9.22e-24:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033840445::NZ_JAWXRM010000045.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21628-23335Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSIK48_08130RefSeq proteinWP_065977858.1
Context group ID
GCF_033840445::NZ_JAWXRM010000045.1::G00036Context members
SIK48_RS08110SIK48_RS08115
Partner locus tags
SIK48_RS08110SIK48_RS08115
Partner old locus tags
SIK48_08125SIK48_08130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065977858.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSIK48_RS08115Primary locus identifier stored in the genes table.
Old locus tagSIK48_08130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXRM010000045.1Sequence record reported by the local genomic context database.
Genomic interval22 649-23 335 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 628-23 335 ntGCF_033840445::NZ_JAWXRM010000045.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033840445::NZ_JAWXRM010000045.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXRM010000045.1All displayed genes belong to this local TCS context.
Neighborhood span21 628-23 335 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 628 nt23 335 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SIK48_RS08110GCF_033840445#SIK48_RS08110
HKClassic
21 628-22 659 nt · Reverse (-)
SIK48_RS08115GCF_033840445#SIK48_RS08115
RROmpRCurrent focus
22 649-23 335 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001704795#DCQ01_RS11700Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1310066
Simplified PFAM architecture for RROC_1310066
PFAM domain coverage: 184 / 228 aa (80.7%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1310066
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_001704795#DCQ01_RS11700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033840445
AssemblyASM3384044v1 · Contighaploid
Genome composition3 979 416 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 90 · HK 42 · RR 47CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key