1 Response_reg#1
1-83 aa · 83 aa · 42.8% of protein
Raw token
Response_reg:1:1.47e-24:83:84:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SIK43_RS07150
Response regulator OmpR family
Clostridioides difficile · GCF_033840405
ClassRRTypeOmpRLength194 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033840405#SIK43_RS07150Stable P2CS identifier used across views.
GenomeGCF_033840405Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length194 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 194 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa194 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
116-190 aa · 75 aa · 38.7% of protein
Raw token
Trans_reg_C:116:9.65e-28:190:75:77- Raw architecture: Response_reg:1:1.47e-24:83:84:111#Trans_reg_C:116:9.65e-28:190:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033840405::NZ_JAWXRL010000040.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1496Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSIK43_07140RefSeq proteinWP_320061422.1
Context group ID
GCF_033840405::NZ_JAWXRL010000040.1::G00041Context members
SIK43_RS07150SIK43_RS07155
Partner locus tags
SIK43_RS07150SIK43_RS07155
Partner old locus tags
SIK43_07140SIK43_07145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320061422.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSIK43_RS07150Primary locus identifier stored in the genes table.
Old locus tagSIK43_07140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXRL010000040.1Sequence record reported by the local genomic context database.
Genomic interval1-586 nt586 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 496 ntGCF_033840405::NZ_JAWXRL010000040.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033840405::NZ_JAWXRL010000040.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXRL010000040.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 496 nt1 496 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 496 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SIK43_RS07150GCF_033840405#SIK43_RS07150
RROmpRCurrent focus
1-586 nt · Forward (+)
SIK43_RS07155GCF_033840405#SIK43_RS07155
HKClassic
588-1 496 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0209405Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587376
Simplified PFAM architecture for RROC_1587376
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-218]
- Domain count: 2
- Matched identifier: RROC_1587376
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-218 ; Trans_reg_C 145-218
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0209405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033840405
AssemblyASM3384040v1 · Contighaploid
Genome composition4 119 885 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 43 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key