1 HisKA#1
45-111 aa · 67 aa · 24.8% of protein
Raw token
HisKA:45:0.0000000000000991:111:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SIK43_RS03545
Histidine kinase, Classic
Clostridioides difficile · GCF_033840405
ClassHKTypeClassicLength270 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033840405#SIK43_RS03545Stable P2CS identifier used across views.
GenomeGCF_033840405Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length270 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 270 aa (65.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa270 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
157-265 aa · 109 aa · 40.4% of protein
Raw token
HATPase_c:157:2.22e-27:265:110:109- Raw architecture: HisKA:45:0.0000000000000991:111:67:64#HATPase_c:157:2.22e-27:265:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033840405::NZ_JAWXRL010000014.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-813Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSIK43_03545RefSeq proteinWP_320061397.1
Context group ID
GCF_033840405::NZ_JAWXRL010000014.1::G00009Context members
SIK43_RS03545
Partner locus tags
SIK43_RS03545
Partner old locus tags
SIK43_03545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320061397.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSIK43_RS03545Primary locus identifier stored in the genes table.
Old locus tagSIK43_03545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWXRL010000014.1Sequence record reported by the local genomic context database.
Genomic interval1-813 nt813 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-813 ntGCF_033840405::NZ_JAWXRL010000014.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033840405::NZ_JAWXRL010000014.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWXRL010000014.1All displayed genes belong to this local TCS context.
Neighborhood span1-813 nt813 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt813 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SIK43_RS03545GCF_033840405#SIK43_RS03545
HKClassicCurrent focus
1-813 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS18640Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503353
Simplified PFAM architecture for HKOC_2503353
PFAM domain coverage: 175 / 393 aa (44.5%)
1 aa393 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[168-233] | HATPase_c[281-389]
- Domain count: 2
- Matched identifier: HKOC_2503353
- Positioned domains: HisKA 168-233 ; HATPase_c 281-389
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS18640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_033840405
AssemblyASM3384040v1 · Contighaploid
Genome composition4 119 885 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 43 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key