1 H_kinase_N#1
2-99 aa · 98 aa · 21.8% of protein
Raw token
H_kinase_N:2:1.68e-28:99:98:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS671_RS02590
Histidine kinase, Classic
Bifidobacterium longum · GCF_033659565
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033659565#RS671_RS02590Stable P2CS identifier used across views.
GenomeGCF_033659565Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage375 / 449 aa (83.5%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation4 items
2 PAS_4#2
129-232 aa · 104 aa · 23.2% of protein
Raw token
PAS_4:129:0.000000000487:232:109:1103 HisKA_2#3
246-315 aa · 70 aa · 15.6% of protein
Raw token
HisKA_2:246:1.05e-30:315:71:764 HATPase_c#4
342-444 aa · 103 aa · 22.9% of protein
Raw token
HATPase_c:342:0.00000000000000188:444:112:109- Raw architecture: H_kinase_N:2:1.68e-28:99:98:139#PAS_4:129:0.000000000487:232:109:110#HisKA_2:246:1.05e-30:315:71:76#HATPase_c:342:0.00000000000000188:444:112:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033659565::NZ_JAWWTJ010000009.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1350Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033659565::NZ_JAWWTJ010000009.1::G00002Context members
RS671_RS02590
Partner locus tags
RS671_RS02590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_318788189.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS671_RS02590Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWTJ010000009.1Sequence record reported by the local genomic context database.
Genomic interval1-1 350 nt1 350 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 350 ntGCF_033659565::NZ_JAWWTJ010000009.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033659565::NZ_JAWWTJ010000009.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWTJ010000009.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 350 nt1 350 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 350 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS671_RS02590GCF_033659565#RS671_RS02590
HKClassicCurrent focus
1-1 350 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS08190Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504244
Simplified PFAM architecture for HKOC_1504244
PFAM domain coverage: 417 / 495 aa (84.2%)
1 aa495 aa
GAF_PdtaSPAS_4HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[5-141] | PAS_4[173-278] | HisKA_2[292-363] | HATPase_c[388-489]
- Domain count: 4
- Matched identifier: HKOC_1504244
- Positioned domains: GAF_PdtaS 5-141 ; PAS_4 173-278 ; HisKA_2 292-363 ; HATPase_c 388-489
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS08190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033659565
AssemblyASM3365956v1 · Contighaploid
Genome composition2 316 199 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key