1 HisKA#1
180-245 aa · 66 aa · 14.4% of protein
Raw token
HisKA:180:0.0000000000351:245:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS916_RS05860
Histidine kinase, Classic
Bifidobacterium longum · GCF_033659365
ClassHKTypeClassicLength459 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033659365#RS916_RS05860Stable P2CS identifier used across views.
GenomeGCF_033659365Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length459 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 459 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa459 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
307-418 aa · 112 aa · 24.4% of protein
Raw token
HATPase_c:307:4.14e-29:418:112:109- Raw architecture: HisKA:180:0.0000000000351:245:66:64#HATPase_c:307:4.14e-29:418:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033659365::NZ_JAWWTB010000006.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span99210-101477Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033659365::NZ_JAWWTB010000006.1::G00016Context members
RS916_RS05860RS916_RS05865
Partner locus tags
RS916_RS05860RS916_RS05865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_143724318.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS916_RS05860Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWTB010000006.1Sequence record reported by the local genomic context database.
Genomic interval99 210-100 589 nt1 380 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span99 210-101 477 ntGCF_033659365::NZ_JAWWTB010000006.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033659365::NZ_JAWWTB010000006.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWTB010000006.1All displayed genes belong to this local TCS context.
Neighborhood span99 210-101 477 nt2 268 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 210 nt101 477 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS916_RS05860GCF_033659365#RS916_RS05860
HKClassicCurrent focus
99 210-100 589 nt · Forward (+)
RS916_RS05865GCF_033659365#RS916_RS05865
RROmpR
100 773-101 477 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS02925Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1854334
Simplified PFAM architecture for HKOC_1854334
PFAM domain coverage: 176 / 459 aa (38.3%)
1 aa459 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[308-418]
- Domain count: 2
- Matched identifier: HKOC_1854334
- Positioned domains: HisKA 180-244 ; HATPase_c 308-418
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS02925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033659365
AssemblyASM3365936v1 · Contighaploid
Genome composition2 536 770 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key