1 HAMP#1
127-198 aa · 72 aa · 16.8% of protein
Raw token
HAMP:127:0.0000731:198:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS916_RS04480
Histidine kinase, Classic
Bifidobacterium longum · GCF_033659365
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033659365#RS916_RS04480Stable P2CS identifier used across views.
GenomeGCF_033659365Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 429 aa (57.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation3 items
2 HisKA#2
209-274 aa · 66 aa · 15.4% of protein
Raw token
HisKA:209:0.00000000000000312:274:66:643 HATPase_c#3
319-428 aa · 110 aa · 25.6% of protein
Raw token
HATPase_c:319:2.53e-21:428:110:109- Raw architecture: HAMP:127:0.0000731:198:72:69#HisKA:209:0.00000000000000312:274:66:64#HATPase_c:319:2.53e-21:428:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033659365::NZ_JAWWTB010000005.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9884-11898Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033659365::NZ_JAWWTB010000005.1::G00013Context members
RS916_RS04475RS916_RS04480
Partner locus tags
RS916_RS04475RS916_RS04480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_234884771.1Primary protein accession used for annex mappings.
UniProt accessionA0A564W021Primary UniProt accession resolved in the annex database.
UniProt IDA0A564W021_BIFLIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS916_RS04480Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWTB010000005.1Sequence record reported by the local genomic context database.
Genomic interval10 609-11 898 nt1 290 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 884-11 898 ntGCF_033659365::NZ_JAWWTB010000005.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033659365::NZ_JAWWTB010000005.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWTB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span9 884-11 898 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 884 nt11 898 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS916_RS04475GCF_033659365#RS916_RS04475
RROmpR
9 884-10 549 nt · Forward (+)
RS916_RS04480GCF_033659365#RS916_RS04480
HKClassicCurrent focus
10 609-11 898 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS04350Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2185257
Simplified PFAM architecture for HKOC_2185257
PFAM domain coverage: 174 / 429 aa (40.6%)
1 aa429 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-272] | HATPase_c[319-428]
- Domain count: 2
- Matched identifier: HKOC_2185257
- Positioned domains: HisKA 209-272 ; HATPase_c 319-428
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS04350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033659365
AssemblyASM3365936v1 · Contighaploid
Genome composition2 536 770 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key