1 Response_reg#1
66-178 aa · 113 aa · 40.6% of protein
Raw token
Response_reg:66:0.00000000000000199:178:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS913_RS01555
Response regulator NarL family
Bifidobacterium longum · GCF_033659285
ClassRRTypeNarLLength278 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033659285#RS913_RS01555Stable P2CS identifier used across views.
GenomeGCF_033659285Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length278 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 278 aa (60.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa278 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
216-271 aa · 56 aa · 20.1% of protein
Raw token
HTH_LUXR:216:0.00000000000545:271:56:58- Raw architecture: Response_reg:66:0.00000000000000199:178:114:111#HTH_LUXR:216:0.00000000000545:271:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033659285::NZ_JAWWSW010000002.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-838Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033659285::NZ_JAWWSW010000002.1::G00008Context members
RS913_RS01555
Partner locus tags
RS913_RS01555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_318792878.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS913_RS01555Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWSW010000002.1Sequence record reported by the local genomic context database.
Genomic interval1-838 nt838 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-838 ntGCF_033659285::NZ_JAWWSW010000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033659285::NZ_JAWWSW010000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWSW010000002.1All displayed genes belong to this local TCS context.
Neighborhood span1-838 nt838 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt838 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS913_RS01555GCF_033659285#RS913_RS01555
RRNarLCurrent focus
1-838 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033659285#RS913_RS01555The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0600460
Simplified PFAM architecture for RROC_0600460
PFAM domain coverage: 168 / 278 aa (60.4%)
1 aa278 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[65-177] | GerE[217-271]
- Domain count: 2
- Matched identifier: RROC_0600460
- Positioned domains: Response_reg 65-177 ; GerE 217-271
Cluster members and taxonomy
Representative gene: GCF_033659285#RS913_RS01555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033659285
AssemblyASM3365928v1 · Contighaploid
Genome composition2 521 396 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key