1 HisKA_3#1
171-230 aa · 60 aa · 15.3% of protein
Raw token
HisKA_3:171:0.00000000000641:230:62:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS938_RS08420
Histidine kinase, Classic
Bifidobacterium longum · GCF_033659085
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033659085#RS938_RS08420Stable P2CS identifier used across views.
GenomeGCF_033659085Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 392 aa (36.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
274-357 aa · 84 aa · 21.4% of protein
Raw token
HATPase_c:274:0.000000295:357:99:109- Raw architecture: HisKA_3:171:0.00000000000641:230:62:68#HATPase_c:274:0.000000295:357:99:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033659085::NZ_JAWWSN010000011.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span90701-92568Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033659085::NZ_JAWWSN010000011.1::G00021Context members
RS938_RS08420RS938_RS08425
Partner locus tags
RS938_RS08420RS938_RS08425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_250231645.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS938_RS08420Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWSN010000011.1Sequence record reported by the local genomic context database.
Genomic interval90 701-91 879 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span90 701-92 568 ntGCF_033659085::NZ_JAWWSN010000011.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033659085::NZ_JAWWSN010000011.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWSN010000011.1All displayed genes belong to this local TCS context.
Neighborhood span90 701-92 568 nt1 868 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 701 nt92 568 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS938_RS08420GCF_033659085#RS938_RS08420
HKClassicCurrent focus
90 701-91 879 nt · Forward (+)
RS938_RS08425GCF_033659085#RS938_RS08425
RRNarL
91 873-92 568 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS10340Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2515541
Simplified PFAM architecture for HKOC_2515541
PFAM domain coverage: 60 / 392 aa (15.3%)
1 aa392 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[171-230]
- Domain count: 1
- Matched identifier: HKOC_2515541
- Positioned domains: HisKA_3 171-230
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS10340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033659085
AssemblyASM3365908v1 · Contighaploid
Genome composition2 535 086 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key