1 Response_reg#1
4-111 aa · 108 aa · 48.9% of protein
Raw token
Response_reg:4:3e-30:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS932_RS08880
Response regulator OmpR family
Bifidobacterium longum · GCF_033658925
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033658925#RS932_RS08880Stable P2CS identifier used across views.
GenomeGCF_033658925Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 221 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-218 aa · 73 aa · 33.0% of protein
Raw token
Trans_reg_C:146:4.12e-23:218:75:77- Raw architecture: Response_reg:4:3e-30:111:111:111#Trans_reg_C:146:4.12e-23:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033658925::NZ_JAWWSF010000023.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7318-9332Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033658925::NZ_JAWWSF010000023.1::G00019Context members
RS932_RS08880RS932_RS08885
Partner locus tags
RS932_RS08880RS932_RS08885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_060620946.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS932_RS08880Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWSF010000023.1Sequence record reported by the local genomic context database.
Genomic interval7 318-7 983 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 318-9 332 ntGCF_033658925::NZ_JAWWSF010000023.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033658925::NZ_JAWWSF010000023.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWSF010000023.1All displayed genes belong to this local TCS context.
Neighborhood span7 318-9 332 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 318 nt9 332 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS932_RS08880GCF_033658925#RS932_RS08880
RROmpRCurrent focus
7 318-7 983 nt · Forward (+)
RS932_RS08885GCF_033658925#RS932_RS08885
HKClassic
8 043-9 332 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281305#RY67_RS08295Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0884839
Simplified PFAM architecture for RROC_0884839
PFAM domain coverage: 180 / 240 aa (75.0%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[23-130] | Trans_reg_C[165-236]
- Domain count: 2
- Matched identifier: RROC_0884839
- Positioned domains: Response_reg 23-130 ; Response_reg 23-130 ; Trans_reg_C 165-236 ; Trans_reg_C 165-236
Cluster members and taxonomy
Representative gene: GCF_001281305#RY67_RS08295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033658925
AssemblyASM3365892v1 · Contighaploid
Genome composition2 460 906 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 37 · HK 10 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key