1 Response_reg#1
27-134 aa · 108 aa · 46.4% of protein
Raw token
Response_reg:27:1.59e-16:134:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS932_RS04640
Response regulator NarL family
Bifidobacterium longum · GCF_033658925
ClassRRTypeNarLLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033658925#RS932_RS04640Stable P2CS identifier used across views.
GenomeGCF_033658925Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 233 aa (69.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
173-226 aa · 54 aa · 23.2% of protein
Raw token
HTH_LUXR:173:0.000000000446:226:54:58- Raw architecture: Response_reg:27:1.59e-16:134:108:111#HTH_LUXR:173:0.000000000446:226:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033658925::NZ_JAWWSF010000007.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span67858-68559Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033658925::NZ_JAWWSF010000007.1::G00012Context members
RS932_RS04640
Partner locus tags
RS932_RS04640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012578145.1Primary protein accession used for annex mappings.
UniProt accessionA0A4S5BCS8Primary UniProt accession resolved in the annex database.
UniProt IDA0A4S5BCS8_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS932_RS04640Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWSF010000007.1Sequence record reported by the local genomic context database.
Genomic interval67 858-68 559 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 858-68 559 ntGCF_033658925::NZ_JAWWSF010000007.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033658925::NZ_JAWWSF010000007.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWSF010000007.1All displayed genes belong to this local TCS context.
Neighborhood span67 858-68 559 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 858 nt68 559 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS932_RS04640GCF_033658925#RS932_RS04640
RRNarLCurrent focus
67 858-68 559 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000825005#BLIC_RS13660Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1084183
Simplified PFAM architecture for RROC_1084183
PFAM domain coverage: 161 / 233 aa (69.1%)
1 aa233 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[27-133] | GerE[172-225]
- Domain count: 2
- Matched identifier: RROC_1084183
- Positioned domains: Response_reg 27-133 ; Response_reg 27-133 ; GerE 172-225 ; GerE 172-225
Cluster members and taxonomy
Representative gene: GCF_000825005#BLIC_RS13660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033658925
AssemblyASM3365892v1 · Contighaploid
Genome composition2 460 906 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 37 · HK 10 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key