1 Response_reg#1
1-110 aa · 110 aa · 55.0% of protein
Raw token
Response_reg:1:1.57e-19:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS920_RS06230
Response regulator NarL family
Bifidobacterium longum · GCF_033658905
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033658905#RS920_RS06230Stable P2CS identifier used across views.
GenomeGCF_033658905Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 200 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
141-192 aa · 52 aa · 26.0% of protein
Raw token
HTH_LUXR:141:0.0000000000000539:192:52:58- Raw architecture: Response_reg:1:1.57e-19:110:111:111#HTH_LUXR:141:0.0000000000000539:192:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033658905::NZ_JAWWSC010000004.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3117-3719Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033658905::NZ_JAWWSC010000004.1::G00015Context members
RS920_RS06230
Partner locus tags
RS920_RS06230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_318788288.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS920_RS06230Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWSC010000004.1Sequence record reported by the local genomic context database.
Genomic interval3 117-3 719 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 117-3 719 ntGCF_033658905::NZ_JAWWSC010000004.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033658905::NZ_JAWWSC010000004.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWSC010000004.1All displayed genes belong to this local TCS context.
Neighborhood span3 117-3 719 nt603 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 117 nt3 719 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS920_RS06230GCF_033658905#RS920_RS06230
RRNarLCurrent focus
3 117-3 719 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033658905#RS920_RS06230The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2140700
Simplified PFAM architecture for RROC_2140700
PFAM domain coverage: 159 / 200 aa (79.5%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-108] | GerE[141-192]
- Domain count: 2
- Matched identifier: RROC_2140700
- Positioned domains: Response_reg 2-108 ; GerE 141-192
Cluster members and taxonomy
Representative gene: GCF_033658905#RS920_RS06230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033658905
AssemblyASM3365890v1 · Contighaploid
Genome composition2 595 901 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 36 · HK 12 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key