1 HisKA_3#1
228-292 aa · 65 aa · 14.5% of protein
Raw token
HisKA_3:228:0.0000000000136:292:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS935_RS12570
Histidine kinase, Classic
Bifidobacterium longum · GCF_033658445
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033658445#RS935_RS12570Stable P2CS identifier used across views.
GenomeGCF_033658445Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 448 aa (33.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
358-443 aa · 86 aa · 19.2% of protein
Raw token
HATPase_c:358:0.0000436:443:96:109- Raw architecture: HisKA_3:228:0.0000000000136:292:65:68#HATPase_c:358:0.0000436:443:96:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033658445::NZ_JAWWRO010000013.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52312-54400Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033658445::NZ_JAWWRO010000013.1::G00016Context members
RS935_RS12570RS935_RS12575
Partner locus tags
RS935_RS12570RS935_RS12575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_038426924.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS935_RS12570Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWRO010000013.1Sequence record reported by the local genomic context database.
Genomic interval52 312-53 658 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 312-54 400 ntGCF_033658445::NZ_JAWWRO010000013.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033658445::NZ_JAWWRO010000013.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWRO010000013.1All displayed genes belong to this local TCS context.
Neighborhood span52 312-54 400 nt2 089 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 312 nt54 400 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS935_RS12570GCF_033658445#RS935_RS12570
HKClassicCurrent focus
52 312-53 658 nt · Forward (+)
RS935_RS12575GCF_033658445#RS935_RS12575
RRNarL
53 672-54 400 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696495#FYJ31_RS07565Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1991590
Simplified PFAM architecture for HKOC_1991590
PFAM domain coverage: 68 / 448 aa (15.2%)
1 aa448 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[228-295]
- Domain count: 1
- Matched identifier: HKOC_1991590
- Positioned domains: HisKA_3 228-295
Cluster members and taxonomy
Representative gene: GCF_009696495#FYJ31_RS07565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033658445
AssemblyASM3365844v1 · Contighaploid
Genome composition2 801 809 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 38 · HK 14 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key