1 HisKA_3#1
210-271 aa · 62 aa · 14.4% of protein
Raw token
HisKA_3:210:0.000000000000992:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS878_RS00955
Histidine kinase, Classic
Bifidobacterium longum · GCF_033658285
ClassHKTypeClassicLength430 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033658285#RS878_RS00955Stable P2CS identifier used across views.
GenomeGCF_033658285Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length430 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 430 aa (34.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
330-415 aa · 86 aa · 20.0% of protein
Raw token
HATPase_c:330:0.0000000000465:415:98:109- Raw architecture: HisKA_3:210:0.000000000000992:271:65:68#HATPase_c:330:0.0000000000465:415:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033658285::NZ_JAWWQW010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span202505-204473Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033658285::NZ_JAWWQW010000001.1::G00005Context members
RS878_RS00955RS878_RS00960
Partner locus tags
RS878_RS00955RS878_RS00960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_250230763.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS878_RS00955Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQW010000001.1Sequence record reported by the local genomic context database.
Genomic interval202 505-203 797 nt1 293 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span202 505-204 473 ntGCF_033658285::NZ_JAWWQW010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033658285::NZ_JAWWQW010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span202 505-204 473 nt1 969 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 505 nt204 473 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS878_RS00955GCF_033658285#RS878_RS00955
HKClassicCurrent focus
202 505-203 797 nt · Forward (+)
RS878_RS00960GCF_033658285#RS878_RS00960
RRNarL
203 790-204 473 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS04195Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2176783
Simplified PFAM architecture for HKOC_2176783
PFAM domain coverage: 156 / 430 aa (36.3%)
1 aa430 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[213-274] | HATPase_c[324-417]
- Domain count: 2
- Matched identifier: HKOC_2176783
- Positioned domains: HisKA_3 213-274 ; HATPase_c 324-417
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS04195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033658285
AssemblyASM3365828v1 · Contighaploid
Genome composition2 798 442 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 38 · HK 14 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key