1 HAMP#1
127-198 aa · 72 aa · 16.8% of protein
Raw token
HAMP:127:0.0000731:198:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS878_RS00800
Histidine kinase, Classic
Bifidobacterium longum · GCF_033658285
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033658285#RS878_RS00800Stable P2CS identifier used across views.
GenomeGCF_033658285Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 429 aa (57.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation3 items
2 HisKA#2
209-274 aa · 66 aa · 15.4% of protein
Raw token
HisKA:209:0.00000000000000312:274:66:643 HATPase_c#3
319-428 aa · 110 aa · 25.6% of protein
Raw token
HATPase_c:319:2.53e-21:428:110:109- Raw architecture: HAMP:127:0.0000731:198:72:69#HisKA:209:0.00000000000000312:274:66:64#HATPase_c:319:2.53e-21:428:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033658285::NZ_JAWWQW010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span173351-175365Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033658285::NZ_JAWWQW010000001.1::G00004Context members
RS878_RS00795RS878_RS00800
Partner locus tags
RS878_RS00795RS878_RS00800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_234884771.1Primary protein accession used for annex mappings.
UniProt accessionA0A564W021Primary UniProt accession resolved in the annex database.
UniProt IDA0A564W021_BIFLIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS878_RS00800Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQW010000001.1Sequence record reported by the local genomic context database.
Genomic interval174 076-175 365 nt1 290 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span173 351-175 365 ntGCF_033658285::NZ_JAWWQW010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033658285::NZ_JAWWQW010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span173 351-175 365 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
173 351 nt175 365 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS878_RS00795GCF_033658285#RS878_RS00795
RROmpR
173 351-174 016 nt · Forward (+)
RS878_RS00800GCF_033658285#RS878_RS00800
HKClassicCurrent focus
174 076-175 365 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS04350Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2185257
Simplified PFAM architecture for HKOC_2185257
PFAM domain coverage: 174 / 429 aa (40.6%)
1 aa429 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-272] | HATPase_c[319-428]
- Domain count: 2
- Matched identifier: HKOC_2185257
- Positioned domains: HisKA 209-272 ; HATPase_c 319-428
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS04350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033658285
AssemblyASM3365828v1 · Contighaploid
Genome composition2 798 442 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 38 · HK 14 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key