1 HisKA_3#1
171-230 aa · 60 aa · 15.3% of protein
Raw token
HisKA_3:171:0.00000000000591:230:62:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS888_RS02985
Histidine kinase, Classic
Bifidobacterium longum · GCF_033658205
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033658205#RS888_RS02985Stable P2CS identifier used across views.
GenomeGCF_033658205Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage140 / 392 aa (35.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
278-357 aa · 80 aa · 20.4% of protein
Raw token
HATPase_c:278:0.000000691:357:95:109- Raw architecture: HisKA_3:171:0.00000000000591:230:62:68#HATPase_c:278:0.000000691:357:95:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033658205::NZ_JAWWQS010000005.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18167-20034Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033658205::NZ_JAWWQS010000005.1::G00003Context members
RS888_RS02985RS888_RS02990
Partner locus tags
RS888_RS02985RS888_RS02990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_174773503.1Primary protein accession used for annex mappings.
UniProt accessionA0A8U0KWL8Primary UniProt accession resolved in the annex database.
UniProt IDA0A8U0KWL8_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS888_RS02985Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQS010000005.1Sequence record reported by the local genomic context database.
Genomic interval18 167-19 345 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 167-20 034 ntGCF_033658205::NZ_JAWWQS010000005.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033658205::NZ_JAWWQS010000005.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQS010000005.1All displayed genes belong to this local TCS context.
Neighborhood span18 167-20 034 nt1 868 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 167 nt20 034 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS888_RS02985GCF_033658205#RS888_RS02985
HKClassicCurrent focus
18 167-19 345 nt · Forward (+)
RS888_RS02990GCF_033658205#RS888_RS02990
RRNarL
19 339-20 034 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344585#RS864_RS02995Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2515542
Simplified PFAM architecture for HKOC_2515542
PFAM domain coverage: 60 / 392 aa (15.3%)
1 aa392 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[171-230]
- Domain count: 1
- Matched identifier: HKOC_2515542
- Positioned domains: HisKA_3 171-230
Cluster members and taxonomy
Representative gene: GCF_033344585#RS864_RS02995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033658205
AssemblyASM3365820v1 · Contighaploid
Genome composition2 560 895 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 33 · HK 13 · RR 18CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key